Information Technology Laboratory

Gold Divider 4Col

Projects and Grants

Products

BioExperTM LIMS
Computer managed comprehensive platform for biomedical scientists to manage projects, specimen, samples and research data. It includes Animal Inventory, which manages animal inventory process, Lab Container, which manages Lab reagents, Sample Inventory, which manages and tracks clinical and research samples, and basic data analysis tools, etc. BioExperTM LIMS is a secure web-based application. The web page is protected by using SSL technology. All data is stored in a central database system which is running on an arrayed server.

QTL MatchMaker
Tool which allows for high throughput mapping of genes to known QTL (Quantitative Trait Loci) and comparative genomics analysis between Homo sapiens, Mus musculus, and Rattus norvegicus. The QTL database organizes information, which is scattered through numerous web sites and publications. QTL MatchMaker is designed to facilitate the analysis of large sets of data produced using genome-scale experimental approaches.

EquipReserver
Web-based application which allows users to request experimental services or reserve shared instruments online. The user is able to update her/his reservation status and to view equipment reservation status. Services provided are recorded directly in the user’s password-protected account.

Services

Database Design and Management

  • Lab information management system
  • Clinical research specimen tracking and annotation
  • Microarray database
  • QTL MatchMaker database
  • Biomedical experiment database - Real time PCR result database, Oligo, and Plasmid database

Application Support

  • GeneTrafficTM
  • BioExperTM LIMS
  • QTL MatchMaker
  • EquipReserver
  • BioBank

Software Development

  • Software tools (Java, C/C++)
  • LIMS components (Java)

Programming Script Development

  • Customized application
  • Digital data transformation and extraction

Affiliated Faculty Research

Primary Investigator Department Projects
Maria Abreu, M.D. Gastroenterology/Medicine IBD system, Clinic Sample Management System
Erwin Bottinger, M.D. Nephrology/Medicine Laboratory Information Management System
Erwin Bottinger, M.D. Nephrology/Medicine QTL MatchMaker
Weijia Zhang, M.D. Nephrology/Medicine Genome Data Transformation Pipeline, Data backup
Greg Khitrov, M.D. Nephrology/Medicine Equipment Reservation online, GeneTraffic Support
Babara Murphy, M.D. Nephrology/Medicine Genomics of Chronic Renal Allograft Rejection
Paul Klotman, M.D. Nephrology/Medicine BioExper LIMS web site set up, and support
Erwin Bottinger, M.D. Nephrology/Medicine BioBank
Viviana Simon, M.D. Infectious Diseases/Medicine BioExper LIMS web site set up, and support
(800) MD-SINAI (800) 637-4624

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